Document Type
Article
Publication Date
6-30-2026
Abstract
Over a decade of advances in Clustered Regularly Interspersed Short Palindromic Repeats (CRISPR) and CRISPR-associated protein 9 (Cas9)-based technologies have culminated in the first-ever FDA-approved CRISPR/Cas-based therapy. Aside from this approved therapy for sickle cell anemia, several CRISPR/Cas-based therapies are currently under development or testing for a range of chronic diseases, including viral diseases like human immunodeficiency virus type 1 (HIV-1) infection, genetic diseases like familial hypercholesterolemia, and cancer. The success of these therapies hinges on the effective delivery of CRISPR/Cas9 components to target regions, efficient Cas endonuclease editing, repair profiles generated, and their resulting outcomes. Here, we discuss the factors that influence the generation of CRISPR/Cas9-generated repair edits, the overall profiles, and outcome prediction(s), as well as the analytical tools that have been developed to date. Finally, how this technology has been used towards a functional HIV-1 cure is discussed.
Recommended Citation
Effah, Samuel; Barrera, Shirley; Urturi Ortiz, Nahia; Dampier, Will; Nonnemacher, Michael; and Wigdahl, Brian, "CRISPR/Cas9-Based Genome Editing: Understanding Differences in DNA Repair Pathways, Profiles, and Outcomes" (2026). Kimmel Cancer Center Faculty Papers. Paper 185.
https://jdc.jefferson.edu/kimmelccfp/185
Creative Commons License

This work is licensed under a Creative Commons Attribution 4.0 License.
PubMed ID
42450173
Language
English

Comments
This article is the author’s final published version in International Journal of Molecular Sciences, Volume 27, Issue 13, 2026, Article number 5905.
The published version is available at https://doi.org/10.3390/ijms27135905. Copyright © 2026 by the authors.